PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PP_4455 FitnessBrowser__Putida:PP_4455 (313 amino acids)

SeqID: PP_4455 FitnessBrowser__Putida:PP_4455
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [6 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 3183460: Glutathione transport system permease protein gsiC]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PP_4455 FitnessBrowser__Putida:PP_4455
MIQFAIKRLMLAIPTLLAMLTAVFVLVRLVPGDPAAVILGDQASAESLAAMREQLGLNQP
IAMQYIHFLGDMLSGNFGVSMTSGRTVLQEVSLVLPWTLQLTFASVLIGLVFGLPLGVWA
ALRRNAWPDYVGRILSLTGLSFPAFVSAMLMLLVFAIHFRWFPVIGSLVDGGFLSQLHAL
TLPALNLGLIMTAYVMRVTRSSMISVLGEDYIRTAKAKGVRPMRLVLRHGLRNALIPIVT
VVGLYFGTLIGNSVLTEIVFNRPGLGKLILGALNTRDYTLLQGLMVVFALCVIVVNIITD
IVYGLVDPRVKIK