PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PP_4735 PP_4735 L-lactate permease (556 amino acids)

SeqID: PP_4735 PP_4735 L-lactate permease
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [14 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 2495662: Glycolate permease glcA]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PP_4735 PP_4735 L-lactate permease
MQTWQQLYSPLGSLGLSALAAVIPIVFFFLALAVFRLKGHVAGSITLALSILVAIFAFQM
PVDMALAAAGYGFLYGLWPIAWIIVAAVFLYKLTVKSGQFEVIRSSVLSITDDQRLQVLL
IGFCFGAFLEGAAGFGAPVAITAALLVGLGFNPLYAAGLCLIANTAPVAFGALGIPIIVA
GQVTGIDAFHIGAMTGRQLPLLSLFVPFWLVFMMDGLRGVKETWPAALVAGLSFAVTQYF
TSNFIGPELPDITSALASLICLTLFLKVWQPKRAFSEAKGSVGAAVVQPSGSQPSPYSFG
EIFKAWSPFLILTVLVTIWTLKPFKAAFAPGGAMYNFVFNFAIPHLDQLVIKTAPIVAAP
TAMPAVFKLDPISATGTAIFLSALISMAVLKINFKTGLTTFKETFWELRWPILSIGMVLA
FAFVTNYSGMSSTMALVLAGTGAAFPFFSPFLGWLGVFLTGSDTSSNALFSSLQATTAHQ
IGVNDTLLVAANTSGGVTGKMISPQSIAVACAATGLVGKESDLFRFTVKHSLFFATIVGL
ITLVQAYWLTGMLVHH

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory