PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PP_4934 FitnessBrowser__Putida:PP_4934 (473 amino acids)

SeqID: PP_4934 FitnessBrowser__Putida:PP_4934
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600189: LPS biosynthesis protein RfaE[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PP_4934 FitnessBrowser__Putida:PP_4934
MKLSMPRFDQAPVLVVGDVMLDRYWHGGTSRISPEAPVPVVKVDQIEDRPGGAANVALNI
AALGAPASLIGVTGQDEAADSLANSLQAAGVRSVFQRIAHQPTIVKLRVMSRHQQLLRID
FEEPFATDPLSLGAEVDSLLEGVKVLVLSDYGKGALKNHQNLIQAARAKGIPVLADPKGK
DFSIYRGASLITPNLSEFETIVGRCVDEAELVAKGLQLLQDLDLGALLVTRGEHGMTLLR
VGQPALHLPARAREVFDVTGAGDTVISTLAAAIAAGEDLPHAVALANLAAGIVVGKLGTA
AISAPELRRAIQREEGSERGVLGLEQLLLAIDDARAHNEKIVFTNGCFDILHAGHVTYLE
QARAQGDRLIVAVNDDASVSRLKGPGRPINSVDRRMAVLAGLGAVDWVISFPEGTPENLL
SQVKPDVLVKGGDYGIDQVVGADIVKGYGGTVKVLGLVENSSTTAIVEKIRKN