PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PP_5061 FitnessBrowser__Putida:PP_5061 (667 amino acids)

SeqID: PP_5061 FitnessBrowser__Putida:PP_5061
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 114921: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PP_5061 FitnessBrowser__Putida:PP_5061
MSSASLTKPPAERVRVNRVVFFTSALMILVLTALLIAVPETAGQVLGVAQKWLTRTFGWY
YMLVICGYLLFVVYLAFSDYGSLKLGGKDDQPDFSYGAWAGMLFSSGIGISLLYFGASEP
LDHYFNPPEGTPASLEAARQGLQLTFLHWGLHGWAIYALVGLAVGYFAYRHNQPLALRSA
LYPLVGERWVKGAAGNAVDIFGMFVTLLGLVTNLGIGAMQVSSGLEYLFGMDHSKTNLLV
VILVMAGVATVAAVSGVENGIRRLSNLNIMLFSGLLIFVLLGGETLHLLNGFVQNVGDYL
NGIVLKTFDLYVYEGEAGKSERWLGLWTVFYWAWWISWGPFVGMFIARISKGRTVRQLVM
GVLLIPLGFTLAWLSIFGNTALDLVINQGAVELGKTALEQPSMSIYQLLEHFPAAKIVIG
VAVFVGFVLFLTPADSGAVMMANLSCTGGKVDEDAPHWMVVFWSVVITLVTIGLLFAGNF
EAMQTMVVLAGLPFSVVLVLFMFGLYKAMKQDVVIEQERAELAARGRRGFSERLTQLELQ
PTQAVVQRFMDKQVSPALKEAAAQLQTQGFEVETRVGQSRNLMGLRVMMEEGNPFVYEVS
LDGYMAAPSEAPVEGEPELRQRFYRAEVYLHDGSQEYDLMGFAPDQIVRDVLDQFESHRQ
VLGRVYS