PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PP_5155 FitnessBrowser__Putida:PP_5155 (409 amino acids)

SeqID: PP_5155 FitnessBrowser__Putida:PP_5155
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 2494084: Glycerate dehydrogenase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PP_5155 FitnessBrowser__Putida:PP_5155
MSKTSLDKSKIRFLLLEGVHQNAVDTLKAAGYTNIEYLTGSLPEAELKEKIADAHFIGIR
SRTQLTEEIFDCAKKLVAVGCFCIGTNQVDLEAARARGIAVFNAPYSNTRSVAELVLAEA
ILLLRGIPEKNASCHRGGWIKSAANSFEIRGKKLGIVGYGSIGTQLSVLAENMGMQVYFF
DPLTKLPLGNAVQVTSLNELLGLADIVSLHVPELPSTQWMIGEKEIRSMKKGAILINAAR
GTVVELDHLAAAIKDKHLIGAAIDVFPVEPRSNDEEFESPLRGLDNVILTPHIGGSTAEA
QANIGLEVAEKLVKYSDNGTSVSSVNFPEVALPAHPGKHRLLHIHENIPGVLSEINKVFA
ENGINISGQFLQTNEKVGYVVIDVDAEYSDLAQEKLQQVKGTIRSRVLF

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory