PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PP_5178 FitnessBrowser__Putida:PP_5178 (306 amino acids)

SeqID: PP_5178 FitnessBrowser__Putida:PP_5178
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [6 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 400831: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PP_5178 FitnessBrowser__Putida:PP_5178
MKLRKLKRAFQRLVPEGRHLVIGVPFIWLFLFFMLPFFIVLKISFAEADVAIPPYTEIYT
YVEDKIQLVLNLANYGLLTEDELYLSAYLGSLKMAFFSTLLCLLIGFPMAYAIANAKKET
QTVLLLLIMMPTWTAILIRVYAWMGILSNNGLLNGFLLWTGLIDQPLQILNTNLAVYIGV
VYSYLPFMILPLFANLVKHDPSLLEAASDLGSSTFNSFWKITVPLSKNGIIAGCMLVFIP
VVGEFVIPELLGGPETLMIGKVLWQEFFNNRDWPVASALAVVMLAILIVPILLFNRSQAK
EMEGRA