PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf1N1B4_1108 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_1108 (455 amino acids)

SeqID: Pf1N1B4_1108 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_1108
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          CytoplasmicMembrane           [matched PS50850: MFS Profile - Cytoplasmic Membrane ]
    SCL-BLAST-        CytoplasmicMembrane           [matched 1170132: Probable glucarate transporter]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf1N1B4_1108 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_1108
MQSTKPTHVRYLILLMLFLVTTINYADRATIAIAGSSLQKDLGIDAVTLGYIFSAFGWAY
VAGQIPGGWLLDRFGSKKIYALSIFTWSLFTVLQGYVGEFGMSTAVVALFMLRFLVGLAE
APSFPGNARIVAAWFPTAERGTASAIFNSAQYFATVLFAPLMGWIVYSFGWQHVFIVMGL
IGIVFSGIWLKVIYSPRQHPMINDAEFKHIADNGGMVDMDQDKGKGKKGDGPKWDYIRQL
LTNRMMLGVYLGQYCINGITYFFLTWFPVYLVQERGMTILKAGFIASLPAICGFIGGVLG
GVISDYLLRKGHSLTFARKAPIIAGLLVSSSIVACNYVDVEWMVVGFMALAFFGKGVGAL
GWAVVSDTSPKQIAGLSGGLFNTFGNIASITTPIVIGYIISSTGSFKWALVFVGCNALVA
VFSYLVIVGPIKRVVLKEPPVSGPETNNKLSEAHS