PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf1N1B4_1239 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_1239 (449 amino acids)

SeqID: Pf1N1B4_1239 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_1239
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 39932236: Taurine--pyruvate aminotransferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf1N1B4_1239 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_1239
MNVPENAPTSLASQLKLDAHWMPYTANRNFQRDPRLIVAAEGSWLTDDKGRKVYDSLSGL
WTCGAGHTRKEIQEAVAKQLGTLDYSPGFQYGHPLSFQLAEKITDLTPGNLNHVFFTDSG
SECADTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQAMMDV
DHLPHTLLASNAFTRGMPEQGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPQ
GYLKRLREICDQHNILLVFDEVITGFGRTGSMFGADSFGVTPDLMCIAKQVTNGAIPMGA
VIASSEIYQTFMNQATPEYAVEFPHGYTYSAHPVACAAGLAALDLLQKENLVQSVAEVAP
HFENALHGLKGSKNVIDIRNYGLAGAIQIAPRDGDAIVRPFEAGMALWKAGFYVRFGGDT
LQFGPTFNSKPQDLDRLFDAVGEVLNKID

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory