PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf1N1B4_1663 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_1663 (970 amino acids)

SeqID: Pf1N1B4_1663 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_1663
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 39932236: Taurine--pyruvate aminotransferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf1N1B4_1663 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_1663
MPLATLIHRASLPSPQVSAAQALELLEEHYGLSGRLQALGSQQDLNFRVDSEQGRFVLKI
CRGDYSALELQAQHAALKHLAEHSGVPVPGVIAAKNGADLLSLEVGGQAVHVRLLDYIDG
QSLTHLNHLSHSVVAGFGRLCGEMDLALAGFNHPGLERTLQWDARHANALIAHLLPVIQD
DPQRKLIAEAAEQAERHLQPLVDKLPVQAIHMDITDDNVVWQRDSQRQWQLHGVIDFGDL
VRTWRITDLSVTCAALLHHADGDPFYILPAVRAYHAVNPLQHEELLALWPLIVARSAVLV
LSGEQQVSIDPGNEYSRDNLTHEWEIFRVATSVPLALMEAAILTAVGQSLPSIGSEDFAP
LLPSLVGREFALIDLGVLSPHFEAGNWEQQGIDLRLLTEAAAAHGLAASRYGQYRLSRTR
PDCAREPDTFPLHVALRVPDGTAVEAPFAGVIHIEGENLLQLDGPELSVRLWGVAPSVRS
SAALVKGQVLGSVSGPLIVQLCRSAQLDAPLFCTPSRAAAWQVLCPSPAMLLGLACDAQE
ELDSQTLLARRDASFARSQKHYYVDPPRIERGWRNHLIDMQGRSYLDMLNNVAVLGHGHP
RMAAVASRQWSLLNTNSRFHYAAIAEFSERLLKLAPDNMDRVFLVNSGTEANDLAIRLAW
AYSGGRDMLSVLEAYHGWSVAADAVSTSIADNPKALSSRPDWVHPVTAPNTYRGEFRGID
SAPDYVRSVEHNLAKIAEQKRQLAGFICEPVYGNAGGISLPPGYLKQVYALVRAQGGVCI
ADEVQVGYGRMGKFFWGFEEQGVVPDIITMAKGMGNGQPLGAVITRREIAEALEAEGYFF
SSAGGSPVSCQIGMAVLDVMEEEKLWENAQVVGGYFKERLEALIDQHPLVGAVHGSGFYL
GVELIRNRETLEPATEETTALCDRLRELGIFMQPTGDYLNILKIKPPMVTSHQSVDFFVD
MLSKVLDEGL