PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf1N1B4_2747 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (633 amino acids)

SeqID: Pf1N1B4_2747 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 126951: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf1N1B4_2747 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)
MQRSIATVSLSGTLPEKLEAIAAAGFDGVEIFENDLLYYDGSPREIRQMCADLGIAITLF
QPFRDFEGCRRDRLPRNLERAERKFDLMQELGTDLVLVCSNASADSIGDEQILVDDLRLL
AERAGARGLRIGYEALAWGRHVNTYQQVWNIVRQADHPSLGVLLDSFHTLSLKGDPSAIA
EIPGDKIFFVQMADAPILAMDVLEWSRHFRCFPGQGEFDLPGFLAPIIKSGYTGPLSLEI
FNDGFRAAPPRANAADGLRSLLYLEEKTRQRLEQEATPAANRDILFDTPGASEYNGIEFL
EFAVDESLGAKLSHWLERLGFVKAGQHRSKSVSLLRQGDINLILNSEPYSFAHSFFESHG
PSLCATAVRVKDSASALARAVAYKGQPYRGLVGPNELELAAVRAPDGSLIYLVDQNADVY
GTDFNLQPTAVASGGLKRIDHMAMALPADSLDSWVLFYKSLLDFEADDEVVLPDPYGLVK
SRALRSRCSSIRLPLNISENRNTAISHALSSYRGSGVHHIAFDCDDIFAEVSRAKEAGVP
LLDIPLNYYDDLAARFDFNDEFLSELAYFNVLYDRDAQGGELFHVYTEPFEGRFFFEIIQ
RKNGYAGYGAANVAVRLAAMAKSRSGGVRQAKL