PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf1N1B4_2771 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_2771 (688 amino acids)

SeqID: Pf1N1B4_2771 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_2771
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [17 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 732104: Inner membrane protein yjiY]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf1N1B4_2771 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_2771
MKNNNSLLRHLPWLLLAILGACALGVVALRRGEAINALWIVVAAVAIYLVAYRYYSLFIA
NNVMQLDPRRATPAVLNNDGLDYVPTNKHILFGHHFAAIAGAGPLVGPVLAAQMGYLPGT
LWLIAGVVLAGAVQDFMVLFMSTRRNGRSLGDMVREEMGRIPGTIALFGCFLIMIIILAV
LALIVVKALAESPWGIFTVMATIPIAMFMGIYMRYIRPGRIGEISVIGVALLLGSIWLGG
QIAADPVWAKAFSFTGVQITWMLIGYGFVAAVLPVWLILAPRDYLSTFLKIGTIVALAIG
ILITMPELKMPALTQFIDGTGPVWKGGLFPFLFITIACGAVSGFHALISSGTTPKLLDNE
VNARYIGYGGMLMESFVAIMAMVAASVIEPGVYFAMNSPAAVVGGDVVAVAQAVSNWGFA
ITPEALQAVAKDIGETTILARAGGAPTLAVGIAQILHSVLPGENTMAFWYHFAILFEALF
ILTAVDAGTRAGRFMLQDLLGSFVPALKRTESWTANLIATAGCVAMWGYLLYQGVIDPLG
GINTLWPLFGISNQMLAGIALMLATVVLIKMKRQRYIWVTMLPAVWLLICTTTAGFIKLF
DANPAIGFLALAKKYSDALANGQILAPAKSIEQMQHVIYNAYTNATLTVLFLLVVFSILF
FALKVGIAAWGKKERSDKESPFQAQPDA