Running PSORTb v3.0 on Pf1N1B4_3178 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_3178 (242 amino acids)
SeqID: Pf1N1B4_3178 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_3178 Analysis Report: CMSVM- CytoplasmicMembrane [No details] CytoSVM- Unknown [No details] ECSVM- Unknown [No details] ModHMM- CytoplasmicMembrane [4 internal helices found] Motif- Unknown [No motifs found] OMPMotif- Unknown [No motifs found] OMSVM- Unknown [No details] PPSVM- Unknown [No details] Profile- Unknown [No matches to profiles found] SCL-BLAST- CytoplasmicMembrane [matched 123175: Cytoplasmic membrane integral membrane protein] SCL-BLASTe- Unknown [No matches against database] Signal- Non-Cytoplasmic [Signal peptide detected] Localization Scores: CytoplasmicMembrane 10.00 Periplasmic 0.00 Extracellular 0.00 OuterMembrane 0.00 Cytoplasmic 0.00 Final Prediction: CytoplasmicMembrane 10.00 -------------------------------------------------------------------------------
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Predict transmembrane helices and signal peptides: Phobius
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>Pf1N1B4_3178 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_3178 MFENLLQNLGLSAFSLQGFGPLLMEGTWMTIKLSVLSLLVAVLLGLLGASAKLSKVKLVR VPAQLYTTLIRGVPDLVLMLLIFYSLQTWLTSFTDFMEWEYIEINPFSAGVITLGFIYGA YFTETFRGAILAVPRGQVEAATAYGLKRGQRFRFVVFPQMMRFALPGIGNNWMVMLKATA LVSIIGLADLVKAAQDAGKSTYQLFYFLVLAALIYLVITSASNVVLRWLERRYAAGSREA VR
Lawrence Berkeley National Laboratory