PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf1N1B4_391 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_391 (309 amino acids)

SeqID: Pf1N1B4_391 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_391
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.00
    Cytoplasmic            2.00
    Extracellular          2.00
    OuterMembrane          2.00
    Periplasmic            2.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf1N1B4_391 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_391
MTILVIAEHDNKVLAPATLNTVAAAAKIGGDIHVLVAGQGAGAVAEAAAKIAGVAKVLVA
DNAAYAHQLPENVAPLVAELGKGYSHILAAATSNGKNILPRVAANLDVDQISEIISVESA
DTFKRPIYAGNAIATVQSNAAVKVITVRATGFDPVAAEGGSAAVEAVAAAHDAGTSSFVG
EELAKSDRPELTAAKIVVSGGRGMQNGDNFKHLYALADKLGAAVGASRAAVDAGFVPNDM
QVGQTGKIVAPQLYIAVGISGAIQHLAGMKDSKVIVAINKDEEAPIFQVADYGLVADLFE
AIPEFEKLV

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory