PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf1N1B4_411 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_411 (334 amino acids)

SeqID: Pf1N1B4_411 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_411
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 2507360: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf1N1B4_411 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_411
MKRRRGIRSLCCAALAVTAVSLSSTLLAAEEVKIGFLVKQAEEPWFQTEWAFAEKAGKDK
GFTLIKIAVPDGEKTLSAIDSLAANGAKGFVICPPDVSLGPAIMAKAKLNGLKVIAVDDR
FVDAGGKFMEDVPYLGMAAFEVGQKQGAAMATEAKKRGWEWKDTYAVINTYNELDTGKKR
TDGSVKALEDAGMPKDHILFSALKTLDVPGSMDATNSALVKLPGAAKNLIIGGMNDNTVL
GGVRATESAGFAAANVIGIGINGTDAIGELKKPNSGFFGSMLPSPHIEGYNTASMMYEWV
TTGKEPPKYTAMDDVTLITRDNFKQELEKIGLWN