PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf1N1B4_4279 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_4279 (643 amino acids)

SeqID: Pf1N1B4_4279 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_4279
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599890: acetolactate synthase large subunit[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    Extracellular          0.01
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf1N1B4_4279 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_4279
MTTTRLTMAQALVKFLDNQYIEVDGVQSKFVAGIFTIFGHGNVLGLGQALEQDSGDLIVH
QGRNEQGMAHAAIGFAKQHLRRKIYACSSSVGPGAANMLTAAATATANRIPLLLLPGDVY
ACRQPDPVLQQIEQFHDLSISTNDAFKAVSKYWDRINRPEQLMTAAIHAMRVLTDPAETG
AVTLALPQDVQAEAYDYPDYFLQKRVHRIERRPATEAMLGDAVALFKGKHKPLIICGGGV
KYSGANAALQAFAERFDIPFAETQAGKSAVVSSHPLNVGGIGETGCLAANLLAKDADLII
GVGTRYSDFTTASKSLFKHPDVQFLNLNISPCDALKLDGVQLLADAKTGLQALAEVLGDY
RSSWGDQPRQAKTQLDEEVDRIYQVEYQAKDFVPEINDHLDPAVLREFIELTGSCLTQSR
VLGVLNETLADDAVIVAAAGSLPGDLQRSWRSKGVNTYHVEYGYSCMGYEVNAALGVKLA
EPEREVYALVGDGSYMMLHSELATSIQERRKINVVLLDNMTFGCINNLQMEHGMDSFGTE
FRFRNPETGKLDGGFVPVDFAMSAAAYGCKTYKVNTVEQLQDALADARLQTVSTLIDIKV
LPKTMIHKYLSWWRVGVAQVSTSARTDAVAKTLNERLAKARQY

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory