PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf1N1B4_4351 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_4351 (304 amino acids)

SeqID: Pf1N1B4_4351 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_4351
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [4 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 400831: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf1N1B4_4351 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_4351
MRTFNQQFLRLVPSGRKLVIGIPFLWLCLFFLLPFFLVMKISFSEAALAIPPYSEIYTFA
EQKFQLLLNIGNYSLLTEDELYISAYFGSLKVAFLSTLMCLVIGFPMAYAITKANKETQN
VLLLLIMMPTWTAILIRVYAWMGILSNNGLLNAFLMWTGLTSHPIEILNTNTAVYIGVVY
AYLPFMVLPLYANLVKHDHSLLEAASDLGSSNFNNFWKITVPLAKNGIIAGCMLVFIPVV
GEFVIPELLGGPETLMIGRVLWQEFFNNRDWPVASALAVVMLAILIVPILLFNRSQAKEM
EGRG