PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf1N1B4_4449 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_4449 (540 amino acids)

SeqID: Pf1N1B4_4449 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_4449
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          CytoplasmicMembrane           [matched PS50850: MFS Profile - Cytoplasmic Membrane ]
    SCL-BLAST-        CytoplasmicMembrane           [matched 17865747: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf1N1B4_4449 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_4449
MSEHVQPMEAVRSAGTSQETQKVIFASSLGTVFEWYDFFLYGALAAVISKQFFAGVNDTT
AFIFALMAFAAGFIVRPFGALVFGRLGDMIGRKYTFLATIVLMGVATFCVGLLPTYASIG
IAAPIILVVLRMLQGLALGGEYGGAATYVAEHAPMGKRGFHTSWIQSTATLGLLLSLLVV
LGCRYFTGDQFEVWGWRIPFLFSIVLLGISTWIRLSLHESPAFVKMKEEGKLCKSPLRDS
FGKWDNLKVVLIALFSINAGQAVTFYAAQFYVLFFLTQFLKMDPALANSLLIVSVIIGAP
FFIFFGWLSDKVGRKPVLMIGLLLATALYFPIFKTLAHYANPAIDQASRQAPITVLADPA
TCTFQFDPVGKAKFDSPCDKVKTFLVKQGLPYNSEAAPAGSAVQVSIGEVKIDGYDEAAL
RGAVTLAGYPSQADTQLINKPMIVALIVALIIISAMCYGPLAALMVELFPTRIRYTSMSL
PYHIGNGWFGGFLPTVSFALVVYTGDIFYGLWYPVVITGVSLVVGMMCLRETKDVDLDKN