PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf1N1B4_4501 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_4501 (591 amino acids)

SeqID: Pf1N1B4_4501 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_4501
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 11140879: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            10.00
    Extracellular          0.00
    CytoplasmicMembrane    0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf1N1B4_4501 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_4501
MTQPARRQPFVLSMLLSAMLLSGQALAAVSDQDILQDPKNPEQVVTNGLGVQGQRYSPLD
TLNVDNVKDLRPVWAFSFGGEKQRGQQAQPMIKDGVMYMTGSYSRVFAVDARTGRKLWQY
DARLPDDIRPCCDVINRGVALYGDLVIFGTLDAKLVALNKDTGKVVWSKKVADHKEGYSI
SAAPLVINGKLITGVAGGEFGVVGKIEAYDPKNGSLLWSRPTVEGHMGYVYKDGKAVENG
ISGGEAGKTWPGDLWKTGGAAPWLGGYYDPETNLLLFGTGNPAPWNSHLRPGDNLYSSSR
LALNPDDGTIKWHFQSTPHDGWDYDGVNELVSFNYNEGGKEIKAAATADRNGFFYVLDRT
NGKFIRGFPFVDKITWASGLDKNGRPIYNDASRPGAPGSEAKGSSVFVAPAFLGAKNWMP
MAYNRDTGLFYVPSNEWGMDIWNEGIAYKKGAAFLGAGFTIKPLNEDYIGVLRAIDPKTG
KEVWRHKNFAPLWGGVLTTKGNLVFTGTPEGFLQAFNAKTGEKVWEFQTGSGVLGSPITW
EMDGEQYVSVLSGWGGAVPLWGGEVAKRVKDFNQGGMLWTFKLPKDLVAKH