PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf1N1B4_4626 3-carboxymuconate cyclase (405 amino acids)

SeqID: Pf1N1B4_4626 3-carboxymuconate cyclase
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 15599399: periplasmic gluconolactonase, PpgL[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf1N1B4_4626 3-carboxymuconate cyclase
MRMRNFWPLLMAGSVGAMGVQAAPVDSYELLVGSYTAGQSQGIYRLNFDSRTGQIDAKPL
QVVKSANPSWLVVSKDQHRLFAVNENGPGQADPVGRVSSYAIDPKTNELSLISQVQTLGN
EPTHSSVSGDASHVFVSNYSVAEDPGGTLAVLPVGTDGKLKPVVQMSSHPSSRVNPERQK
SAHVHSVVSSPDGQYVFSNDLGADKIFVYRFDPKANPELPLTAAKPASVQLPPGSGPRHL
LFSADGKHAWLTMEMSAQVAVFDYRDGKLEQTQLVDLAAGLPTSGKAAAALHASADGKFL
YVSNRGTTNQLLVFAIDPATGNLKELQRRSVDGDHPREFSLDPSGKFVLIANQKSNQIVV
VERDAKTGLLGKTVQKTTDGCPERSQVPGASIDRRPRLMGPATFY