PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf1N1B4_4643 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_4643 (1635 amino acids)

SeqID: Pf1N1B4_4643 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_4643
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598264: NAD-dependent glutamate dehydrogenase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            7.33
    CytoplasmicMembrane    2.64
    Periplasmic            0.03
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf1N1B4_4643 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_4643
MAFFTAASKADFQHQLQAALAQHISEQALPQVALFAEQFFGIISLDELTQRRLSDLAGCT
LSAWRLLERFDHAHPQVRVYNPDYERHGWQSTHTAVEVLHHDLPFLVDSVRTELNRRGYS
IHTLQTTVLSVRRGSKGELLEILPKGTQGEGILQESLMYLEIDRCANTAELNVLTKELEQ
VLGEVRVAVADFEPMKAKVQELIEGIDNSQFIINADEKSEIKSFLEWLVGNHFTFLGYEE
FVVGEDQNGGHIEYDQNSFLGLTKLLRAGLTVDDLRIEDYAVNYLREPTPLSFAKAAHPS
RVHRPAYPDYVSIRQIDANGKVVKECRFMGLYTSSVYGESVRVIPYIRRKVEIIEQRSGF
QAKAHLGKELAQVLEVLPRDDLFQTPVDELFTTVMSIVQIQERNKIRVFLRKDPYGRFCY
CLAYVPRDIYSTEVRQKIQQVLMDRLKASDCEFWTFFSESVLARVQLILRVDPKNRLDID
PVLLEKEVVQACRSWQDDYASLVVESFGEAQGTNVLADFPKGFPAGYRERFAAHSAVVDM
QHLLSLSEKNPLVMSFYQPLAQVSGQRMLHCKLYHADTPLALSDVLPILENLGLRVLGEF
PYRLRHNSGREFWIHDFAFTAAEGLELDIQQLNDTLQDAFVHIVRGDAENDAFNRLVLTA
GLPWRDVALLRAYARYMKQIRLGFDLGYIASTLNNHTDIARELTRLFKTRFYLARKLASD
DLEDKQQRLEHAILAALDDVQVLNEDRILRRYLDLIKATLRTNFYQTDTHGQNKSYFSFK
FNPHQIPELPKPVPKFEIFVYSPRVEGVHLRFGNVARGGLRWSDREEDFRTEVLGLVKAQ
QVKNSVIVPVGAKGGFLPRRLPLGGSRDEIAAEGIACYRIFISGLLDITDNLKDGALVPP
ANVVRHDDDDPYLVVAADKGTATFSDIANGIAIDYGFWLGDAFASGGSAGYDHKKMGITA
KGAWVGVQRHFRERGINVQEDSITVVGVGDMAGDVFGNGLLMSDKLQLVAAFNHLHIFID
PNPEPANSFAERQRLFDLPRSAWSDYDTSIMSEGGGIFSRSAKSIAISPQMKERFDIQAD
KLTPTELLNALLKAPVDLLWNGGIGTYVKASTESHADVGDKANDALRVNGNELRCKVVGE
GGNLGMTQLGRVEFGLNGGGSNTDFIDNAGGVDCSDHEVNIKILLNEVVHAGDMTDKQRN
QLLASMTDEVGNLVLGNNYKQTQALSLAARRAFVRIAEYKRLMNDLEGRGKLDRAIEFLP
AEEAINERLAEGHGLTRAELSVLISYSKIDLKEALLNSLVPDDDYLTRDMETAFPPTLVS
KFSAAMRRHRLKREIVSTQIANDLVNHMGITFVQRLKESTGMSPANVAGAYVIVRDIFHL
PHWFRQIEALDYQVSADVQLELMDELMRLGRRATRWFLRSRRNEQNAARDVAHFGPHLAA
LGLKLDELLEGPTREGWQTRYQAYVAAGVPELLARMVAGTTHLYTLLPIIEASDVTGQNA
ADVAKAYFAVGSALDITWYLQQISALPVENNWQALAREAFRDDVDWQQRAITISVLQQGD
GTQDVETRLALWMEEHEGMIERWRAMLVEIRAASGTDYAMYAVANRELLDLALSGQAVVP
AAATAAVSTELEPAA