PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf1N1B4_4804 ABC-type polar amino acid transport system protein, ATP-binding protein (254 amino acids)

SeqID: Pf1N1B4_4804 ABC-type polar amino acid transport system protein, ATP-binding protein
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 121397: Glutamine transport ATP-binding protein glnQ]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.99
    Cytoplasmic            0.01
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    9.99

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf1N1B4_4804 ABC-type polar amino acid transport system protein, ATP-binding protein
MRSIVKAVSLNKYYDHFHALKDINIEVEQGEVLCIIGPSGSGKSTLLRCVNQLEKIDKGG
LWVDGELVGYRIVGNKLHELNESQIARQRLATGMVFQRFNLFPHMTVLQNIIEGPCQVLK
RSPKEAHEEALELLARVGLADKRNSYPIELSGGQQQRVAIARALAMRPKLMLFDEPTSAL
DPELVGEVLSVMRDLAQTGMTMIVVTHELGFAREVSNRMVFMDEGQIVEAGSPEEILISP
QNPRTQSFISAVRT