PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf1N1B4_4965 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_4965 (502 amino acids)

SeqID: Pf1N1B4_4965 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_4965
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [11 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf1N1B4_4965 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_4965
VDILASLASGFGAALAPINLMWGFIGCLLGTAIGVLPGIGPALTVALLLPITAKVDPTGA
LIMFAGIYYGAQFGGSTTSILLNTPGESSSMVTALEGNLMARNGRAGPALATAAIGSFVA
GTIATILLTLFAPLVATLALKFGPAEYFAILVLAFTTVSAVLGASMLRGFASLGIGLTIG
LIGLDSTSGIARYTMEVPELVDGIEVVLVAVGLFAVGEALYSVLYQKEETARRNRLSSLW
MTRADWKRSIPAWLRGTLIGFPFGSIPAGGAEIPTFLSYSTERKLSKYPKEFAASKGEGA
IEGVAGPEAANNASATGSLVPLLTLGIPTSATAAILLAAFQNYNLQPGPLLFQTSGELVW
TLVASLYIGNAILLVLNLPLVGLWVKLLQIPRPYLNAGILVFATIGVYGMRHSTFDLFLM
LGIGWAGVLMRRFDFPVAPVIVGMLLGPMAEKQLRNALSISQGDWMVFVTQPIAASVLVL
TLLVLLVPYVLHKRGIKLHEDD