PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf1N1B4_5042 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_5042 (899 amino acids)

SeqID: Pf1N1B4_5042 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_5042
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16131244: nitrite reductase, large subunit, NAD(P)H-binding [Escherichia coli K12]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf1N1B4_5042 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_5042
VGNIGGSGEGARSNTAKNRQRRLKPRGFRRFFLLFLTVIGFGWVLTMNSNVAALNKLQTL
IVIGNGMVGHHCVEQLIERGALDHYRLHVFSEEPMRAYDRVHLSEYFGGRDAESLALGEA
SLYQTPGVTLHLGVPVLEIDRARRQVITAQGCVAYDKLVLATGSYPFVPPIEGAEGDSRL
VYRTLEDLDAIRAAAANARRGVVVGGGLLGLEAANALKSLGLEAHVVEFAPRLMPVQLDE
QGGLALKAQIERLGVGVHLSRGTQSISAGEEYRYRMNFANDEFLEADLIVFSAGIRAQDA
LARQCALDIGPRGGVVIDDQCLTSDPNIYAIGECAAWNGSLFGLVAPGYQMARGVATLLC
NQVAEPFQGADMSTKLKLLGVDVGSIGDAHAQTPGARSYQFIDEATASYRRLVVDADSKR
VLGAVLVGDNSYYDTLLQYMQNGIALPSEPASLILPSSTGAPTLGPGALPESATVCSCHN
VTKGSICSAIDGGCTDLGLLKSQTKACTGCGGCAGLLKQVFEHELIARGVSVDKSLCEHF
AYTRQELYALVRVEGVITFEELLAKHGRGHTGCDVCKPAVGSILASCWNQPIMDASLVPL
QDTNDTFMANMQKNGTYSVVPRIAGGEITADKLIAIGVVAKKYDLYTKITGGQRIDLFGA
QLHQLPDIWSELIEAGFETGHAYGKSTRTVKSCVGSTWCRYGVQDSVKMALTLEDRYKGL
RSPHKLKFAVSGCTRECAEAQSKDVGVIATENGWNLYVAGNGGMRPRHAELFATDLDDET
LIRYIDRFLMFYIRTADKLQRTSVWRESLEGGLDYLKDVIINDSLGLGAELEAQMQLVVN
RYECEWANALKDPEKLKRFRTFVNDQRPDPDIHFVQERGQRRPIMAAELNLIPVTEENA