PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf1N1B4_5844 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_5844 (259 amino acids)

SeqID: Pf1N1B4_5844 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_5844
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Periplasmic                   [matched PS01039: SBP_BACTERIAL_3 Pattern - Periplasmic]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 15599060: probable amino acid binding protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            10.00
    Extracellular          0.00
    CytoplasmicMembrane    0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf1N1B4_5844 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_5844
MKKRVMFGALALSMLSLTAMADDAKPIRLGIEAGYPPFSMKNPDGKLTGFDVDIGDALCE
QMKVKCTWVEQEFDGLIPALKVKKIDAILSSMTITDDRKKNVDFTIKYYHTPARFVMKEG
TDVKDPLTELKGKKVGVLRASTHDRFATEVLVPAGINLVRYGSQQEANLDMVAGRLDAML
ADSVNLDDGFLKTDAGKGFAFVGPTYEDAKYFGGGAGIAVRKGDKELADKFNTAITEIRA
NGKYKQVQDKYFNFDVYGH