PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf1N1B4_5857 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_5857 (344 amino acids)

SeqID: Pf1N1B4_5857 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_5857
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596094: arginine/ornithine succinyltransferase AII subunit[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            7.33
    CytoplasmicMembrane    2.64
    Periplasmic            0.03
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf1N1B4_5857 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_5857
MIIRPVQVTDLPALLDLVQRAGPGFTTLPASEERLTHRVRWAQRTFAEQVERADADYLFV
LEDDDQQVVGVSALVGAVGLREPWYNYRVGLTVSSSPDLGIARQLPTLFLNNEMTGQSEI
CSLFLRHDQRHGNNGRLLSLGRLLFVAEFPHLFGDKLIAELRGSADEQGCSPFWDSLGRH
FFKMDFSHADHLSGLGSKAFIAELMPRQPLYTCLLTEQAQAVIGKPHPNTEPALKILTAE
GFSHKGYIDIFDAGPVIEAPVSKIRTVRDSQRLELAIGTLDDQAPIWLIHNRRLENCRIT
TAQARLVGNSLIVDRLTAKRLQLQPGNSVRAVPLRNRQQQAVAA