PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf1N1B4_641 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_641 (591 amino acids)

SeqID: Pf1N1B4_641 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_641
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Cytoplasmic                   [matched PS50862: AA_TRNA_LIGASE_II Profile - Cytoplasmic ]
    SCL-BLAST-        Cytoplasmic                   [matched 97196806: Aspartyl-tRNA synthetase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            10.00
    Periplasmic            0.00
    CytoplasmicMembrane    0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf1N1B4_641 FitnessBrowser__pseudo1_N1B4:Pf1N1B4_641
MMRSHYCGQLNESLEGQEITLCGWVHRRRDHGGVIFLDIRDRDGLAQVVFDPDRAESFAA
ADRVRSEYVVKITGKVRLRPAGATNANMASGMIEVLGYELEVLNEAETPPFPLNEFSDVG
EETRLRYRFLDLRRPEMLEKLRLRSRMTTSIRRFLDENGFLDVETPILTRATPEGARDYL
VPSRTHAGSFFALPQSPQLFKQLLMVAGFDRYYQIAKCFRDEDLRADRQPEFTQIDIETS
FLDEKEIMGITEQMIRNLFKEVLDLEFGDFPHMTFEEAMRRYGSDKPDLRNPLELVDVAD
QLKEVDFKVFSGPANDPKCRVAALRVPGAASMPRSKIDDYTKFVGIYGAKGLAYIKVNER
AKGVEGLQSPIVKNIPEANLNVILDRVGAVDGDIVFFGADKSKIVSEALGALRIKVGHDL
NLLTCEWAPMWVVDFPMFEENDDGSFTALHHPFTAPKCTPQELEANPATALSRAYDMVLN
GTELGGGSIRIHRKEMQQSVFRLLGISEAEQEEKFGFLLDALKYGAPPHGGLAFGLDRLV
MLMTGAQSIREVIAFPKTQSAACVMTQAPGLVDAKALRELHIRLRETPKAE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory