PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf6N2E2_1382 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_1382 (591 amino acids)

SeqID: Pf6N2E2_1382 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_1382
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 11140879: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            10.00
    Extracellular          0.00
    CytoplasmicMembrane    0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf6N2E2_1382 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_1382
MSQPARRQPFAVSLLLSAMLLSGSALAAVTDQEILQDPKNPEQIVTNGLGVQGQRYSPLD
TLNTDNVKDLRPVWAFSFGGEKQRGQQAQPMIKDGVMYLTGSYSRVFAVDARTGKKLWQY
DARLPDDIRPCCDVINRGVALYGDLVFFGTLDAKLVALNKDTGKVVWSKKVADHKEGYSI
SAAPLIVNGKLITGVAGGEFGVVGQISAYDPKNGELLWTRPTVEGHMGYVYKDGKAVENG
ISGGEAGKTWPGDLWKTGGAAPWLGGYYDPETNLLLFGTGNPAPWNSHLRPGDNLYSSSR
LALNPDDGTIKWHFQSTPHDGWDYDGVNELISFNYKEGGKDIKAAATADRNGFFYVLDRT
NGKFIRGFPFVDKITWATGLDKDGRPIYNEASRPGAPGSEAKGSSVFVAPAFLGAKNWMP
MAYNQDTGLFYVPSNEWGMDIWNEGIAYKKGAAFLGAGFTIKPLNEDYIGVLRAIDPKTG
KEVWRHKNYAPLWGGVLTTKGNLVFTGTPEGFLQAFNAKTGEKVWEFQTGSGVLGSPITW
EMDGEQYVSVVSGWGGAVPLWGGEVAKRVKDFNQGGMLWTFKLPKALVAKR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory