PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf6N2E2_1389 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_1389 (618 amino acids)

SeqID: Pf6N2E2_1389 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_1389
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 11140879: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            10.00
    Extracellular          0.00
    CytoplasmicMembrane    0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf6N2E2_1389 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_1389
MRIKTLPALSSLTVALLLAGSLSTSPLARAAVTWEDIANDHLTTQDVLQYGMGTNAQRWS
PLAQVNDKNVFKLTPAWSYSFGDEKQRGQESQAIVSDGVVYVTGSYSRVFALDAKTGKRL
WTYNHRLPDNIRPCCDVVNRGAAIYGDKIYFGTLDARVVALDKNTGKVVWNKKFGDHAGG
YTMTGAPVLIKDKTSGKVLLIHGSSGDEFGVVGQLFARDPDTGEEVWMRPFVEGHMGRLN
GKDSTPTGDVKAPSWPDDKTTETGKVEAWSHGGGAPWQSASFDAETNTIIVGAGNPGPWN
TWARTAKDGNPHDYDSLYTSGQVGVDPSTGEVKWFYQHTPNDAWDFSGNNELVLFDYKDK
DGKVVKATAHADRNGFFYVVDRNNGKLQNAFPFVDNITWASHIDLKTGRPVENAGQRPAK
PLPGETKGKPVEVSPPFLGGKNWNPMAYSQDTGLFYVPGNQWKEEYWTEEVNYKKGSAYL
GMGFRIKRMYDDHVGSLRAMNPTTGKVVWEHKEPLPLWAGVLATKGNLVFTGTGDGFFKA
FDAKTGKELWKFQTGSGIVSPPITWEQDGEQFIGVTVGYGGAVPLWGGDMAELTKPVAQG
GSFWVFKIPSWDKATAQK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory