PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf6N2E2_1793 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_1793 (308 amino acids)

SeqID: Pf6N2E2_1793 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_1793
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 20141669: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf6N2E2_1793 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_1793
MRRCTLLFATLLLLFSQWAAADYRIGVSIARVDDNFMTYVRNGLAEAAKKENVQIQFEDA
QGDVVRQLNQVQGFINQKVDAVIVLPVDTSATANITRAAVEAKTPLVYVNRHPDERTLPK
GVVTVASNDIEAGHLQMRYLAEKLGGKGNLAIIMGDLAQNATHDRTEGVKQVLKDYPGIK
IVEQQSAEWQRNKGMDLTSNWLLAGSRFDAIVANNDEMAIGAAMALQQAGKTKGEVAIVG
IDGLPDGLAAIKRGMLVASVFQDPKAQATSAVQAALKMIKGEPVETDVWVPFQLIKPEQL
AVFEQHYK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory