PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf6N2E2_1904 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_1904 (752 amino acids)

SeqID: Pf6N2E2_1904 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_1904
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 118508: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf6N2E2_1904 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_1904
MSKLDDSIAERGVLSDAQPVNVSRRRFLQASAGVTAGALVISFGIPLGPLRAAERAQALP
PGARVPAFLEIRPDNTVRLQSPFIEGGQGIFTGMAQVVGEELDIDPASFLVENAAPGNDF
KVMEGGMRFTGGSRSMRASYMTMRRLGASARLMLLQAASSHWKVPLAQLTTEPGRVIHAA
SNRSITYGELAPLTLDLPIPDPQTVTLRDPATFRWIGKPVQRIDVYDKSTGKAQYTIDTR
VEGMLHAAVQHAPRLGLQVGLVRNEDQIRNLKGVHSVHRLEGAVAVVAQRWWVAKRAVEA
LQVEWTEPGGDSTVRYMPANFDTQAYAEQLSKTTDAGDEAEREGDLQQGLAGAKKVVSAT
YHTQYLNHAQLEPPSALARFDAEGNLDLWLPNQAPDLFLADVAKRTGLDPSKITLHSPLL
GGFFGRHFLYPNASPYPQAIQLAQSTGRPIKVIWSREEEFLRDVLRPSAVVRFRAGLDEQ
GMPVAFEAISATEGPTEGIANKQGDKIDPTAVEGLAGKKYAIAHRRIAQLYSQTPVMLGY
WRSVGNSINDFMYEAFLDEVADAGGQDPYELRAKLLQGNERLSHLLKVVADLSGGWKRGP
FTAQDGTKRARGVAMASPFGTETAVIAEVSISNGAVKVHDIWQAIDPGSIVNPAIIEAQV
NSAVALGLSQTLVEQAIYKGGTPVARNYDLYRILTPEMMARVHVRVVESGAPMGGIGEPP
LPAVAPAVANAVSRLTGQRIRSMPLSQYRFDT