PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf6N2E2_2033 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_2033 (530 amino acids)

SeqID: Pf6N2E2_2033 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_2033
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 1168476: Oligopeptide transport ATP-binding protein appF]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.99
    Cytoplasmic            0.01
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    9.99

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf6N2E2_2033 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_2033
MKRNLEMSDNLIEIRDLSVAFNDQTVVRNLCLDIRPGECLALVGESGSGKSVTAHSILQL
LPENEAHTSGSIRYRGQELVGADTQALRELRGNRIAMIFQEPMTSLNPLHSVEKQIGETL
MLHKGLGGKAARQRILELLTLVGIQNPVERLKAYPHQLSGGQRQRVIIAMALACEPELLI
ADEPTTALDVTVQRKILLLLKSLQQRLGMSLLLISHDLNLVRSIAQRVCVMKAGEIVEQA
PCETLFSAPKHPYSCELLHAEPEGEALPRDDREEVLQVQDLRVSFPLSGGLFRRKEYLRA
VDGISLSIQRGKTLGIVGESGSGKSTLGQAILRLIESEGSIRFQGQALDHLSQKALRPWR
KQMQVVFQDPFGSLSPRMSVQQIISEGLEVHQPSSPEQCEARVIQALKEVGLDPATRHRY
PHEFSGGQRQRIAIARALVLKPALILLDEPTSALDRTVQKQVVALLRQLQQKYDLTYLFI
SHDLAVVRALAHDMIVIKDGKVVEQGASHDVFDSPQHPYTKELLAAAHPG