PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf6N2E2_2116 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_2116 (447 amino acids)

SeqID: Pf6N2E2_2116 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_2116
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf6N2E2_2116 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_2116
MTTPEASKAPIITSMQIVPVAGHDGMLLNLSGAHGPFFTRNIVILKDNAGHTGVGEVPGG
ERIRQTLEDARSLVVGSPIGTYQKILNTVRQAFADRDAGGRGLQTFDLRITIHAVTGLEA
ALLDLLGQHLDVPVAALLGEGQQRDEVKMLGYLFYVGDRQQTDLPYRSEPDADNDWFRVR
HEKALDADAVVRLAEAAHSRYGFQDFKLKGGVLQGDAEIEAVTALAERFPQARITLDPNG
AWSLKEAIRLCRDQHKVLAYAEDPCGAENGYSGREVMAEFRRATGLKTATNMIATDWREM
GHAITLQSVDIPLADPHFWTMQGSVRVAQMCNEWGLTWGSHSNNHFDISLAMFTHVAAAA
PGEITAIDTHWIWQDGQRLTKAPLQIQGGCVQVPKKPGLGIELDTDQLAKAHELYKGMGL
GARDDAVAMQFLIPGWTFNNKRPCLVR