PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf6N2E2_2163 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_2163 (465 amino acids)

SeqID: Pf6N2E2_2163 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_2163
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Extracellular          0.26
    Periplasmic            0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf6N2E2_2163 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_2163
MSSNIVDYDFTDIQLKSLIAHSSQGQRLKPLLSLRYAFRSDEFWRDLDHWKDIDVELFLN
HLWQEKNAITSVGALGALIKNRISAAFLRDLEEGHQMAPMSIRLTPYILSLIDWDNPYLD
PLRRQFLPLASEISIDHPMVKLDPMGEQDDSPAPGLTHRYPDRVLFLATNVCPVYCRYCT
RSYAVGLDTDAVTKKKINAPGERWEPALRYIETNSSVEDVVISGGDAYRLKARQITEIGE
RLLDVPHVRRMRFATKGLAVLPMKIQSDHDWTDAISRLSDRARKVHKSIAIHTHFNHPNE
ITAVTAKALGMLYERGVEVRNQAVILKGVNDNPQTMHRLNECLAYLNVRPYYCFQGDMIR
GVEALRTSLCDSIALEKSTRGLIAGHNTPHFIVDLPGGGGKRDIHSYDYYDQHLGIAAYR
APAVKKDKIFLYCDPLHTLTADAQALWTNPATRTQLLDDVLKSVK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory