PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf6N2E2_2179 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_2179 (449 amino acids)

SeqID: Pf6N2E2_2179 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_2179
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 85700297: Inner membrane transport protein yeeF]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf6N2E2_2179 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_2179
MSIEAFGYKQELKRGLSLTDLVVYGMIFMIPIAPFGVYGYVNAEAPGMVPLAYIIGMVAM
LFTALSYGSMARAFPVAGSVYSYAQRGLNPHVGFIAGWLMLLDYLLIPPLLYVYASMALN
HLYPDIPKVGFILAFLVSATFVNLRGITFTARMNIIFLLAQLVVLGIFLFYAWNALHGGA
GNGQLTLAPLYSPEHFNFALLMQAVSIAVLSFLGFDAISTLAEEIKGDPGRSVGKAALVT
LLVMGAIFVVQTWIATDLAAGMGFKSADTAFYEIAELAAGSWLATLTAVATALAWGVAVA
ITSQAAVSRLLFGMARDGQLPKVLAKVHPTHNTPYLSIYLVAVLSLLICYLFIDAVDTLT
SLVNFGALSGFMLLHITVINHYWRRQQSGQLIRHLICPLVGFVIVAAIMYNMGVAAQKLG
LIWIAAGVIYLCVLNKFGNPTAVPDPAGQ