PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf6N2E2_2809 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_2809 (763 amino acids)

SeqID: Pf6N2E2_2809 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_2809
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 20141276: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf6N2E2_2809 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_2809
MKKLCLLGLFVSLASQSVLADNLPAPIENKDAFISNLMKQMTLEEKIGQLRLISIGPEMP
REMIRKEIAAGNIGGTFNSITRDENRPMQDAAMRSRLKIPMFFAYDVIHGHRTIFPIPLA
LASSWDMDAIYRSGRVAAQEAAADSLDITFAPMVDISRDPRWGRTSEGFGEDTYLVSRIA
GVMVKAFQGNGANAADSIMASVKHFALYGAVEGGRDYNTVDMSPLKMYQDYLPPYRAAID
AGAGGVMVALNSINGVPATANTWLMNDLLRKEWGFKGLAVSDHGAIFELIKHGVAKDGRE
AAKLAIKAGIDMSMNDSLYGKELPGLLKAGEIEQSDIDNAVREVLAAKYDMGLFKDPYLR
IGKAEDDPADTYAESRMHRADARDVARRSLVLLENRNQTLPLKKTAKIALVGPLAKAPID
MMGSWAAAGRPAQSVTLFDGMTRALGADSKLIYARGANITGDKKVLDYLNFLNFDAPEVV
DDPRPAQVLIDEAVKAAKDADVVVAAVGESRGMSHESSSRTELNIPASQRELIKALKATG
KPLVLVLMNGRPLSLLEEKQQADAILETWFSGTEGGNAIADVLFGDYNPSGKLPITFPRS
VGQIPTYYNHLSIGRPFTPGKPGNYTSQYFDDTTGPLYPFGYGLSYTEFSLSDMALSSTT
LNKTGKLDASVTLENTGKRDGETVVQLYIQDVTGSIIRPVKELKNFRKVMLKAGEKKVIH
FTITEDDLKFFNAQLKYAAEPGKFNVQIGLDSQDVKQQSFELL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory