PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf6N2E2_326 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_326 (410 amino acids)

SeqID: Pf6N2E2_326 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_326
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          CytoplasmicMembrane           [matched PS50850: MFS Profile - Cytoplasmic Membrane ]
    SCL-BLAST-        CytoplasmicMembrane           [matched 3025166: Putative nucleoside transporter yegT]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf6N2E2_326 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_326
MTTMNARLSVMMFLQFFIWGGWFVTLGTFLSSTLGASGGQIGMAFSTQSWGAIIAPFVIG
LIADRFFNAERILAVLHLLGAVLLYQLYSAADFSVFYPYVLVYMVVYMPTLALVNSVAFR
QMRDPALEFSRIRVWGTIGWIVAGVVISFVFAWDSREAISAGGLRNTFLMAAVASLVLGL
YSFTLPATAPLKEQARAGGVRQLLGLDALGLLKDRSYLVFFIASILICIPLAFYYQNANP
FLAETGMTNPTAKMAIGQVSEVLFMLLLPLFIQRFGIKLALLVGMLAWALRYLLFAYGNN
GDLAFMLFTGIALHGICYDFFFVSGQIYTDAKAPERFRSSAQGLITLATYGVGMLIGFWV
AGQVTDHFVVAGGHDWQSIWLFPAGFALLVLLCFLFTFRGQQALAASSKA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory