PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf6N2E2_3877 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_3877 (959 amino acids)

SeqID: Pf6N2E2_3877 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_3877
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 39932236: Taurine--pyruvate aminotransferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf6N2E2_3877 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_3877
LPSPQISAEQALVLLRSNYGLSGDLRPLGSNQDLNYRVDSERGRFVLKICHGDYAVQELQ
AQHAALKQLAGHGAVKVPRVITASNGQDLLTLDVDGQAIHMRLLEYIDGQSLTQLKHLPL
ELVTGLGRLCAEMDLALATFDHPGLERTLQWDARHAPALVDHLLPVIDDDQRRQLIAEVA
QQAERRLQSLKASLPVQAIHMDITDDNVVWQRDAQRQWQLQGVIDFGDLIRTWRITDLSV
TCAALLHHADGDPFFILPAIKAYQAVNPLQREELLALWPLIVARAAVLVLSGEQQVSIDP
DNQYSRDNLAHEWEIFRVAHSVPFELMEAAIFTAVGHSLPPIASEGFAPLLPTLVGREFA
LIDLGVLSPHFEAGNWEQPGIDQRLLSEAAGVHGLAASRYGQYRLSRTRPDSAVEPDTYP
LHVELSVPRGTPLESPFAGVVHKAADGLLQLDSAQLSVRLWGVTSPLHSGAALVKGQVLG
EVTGPLRVQLCRGAQVNPPLFCTPSRAAAWQALCPSPAVLLGLACDAEPEIDPQVLLARR
DASFARSQKHYYVDPPRIERGWRNHLIDMQGRSYLDMLNNVAVLGHGHPRMAAVAARQWS
LLNTNSRFHYAAIAEFSERLLALAPSNMDRVFLVNSGTEANDLAIRLAWAYSGGRDMLSV
LEAYHGWSVAADAVSTSIADNPQALSSRPDWVHPVTAPNIYRGEFRGPDTAPDYVRSVEH
NLAKIAENNRQLAGFICEPVYGNAGGIALPPGYLKQVYAMVRERGGVCIADEVQVGYGRM
GEFFWGFEEQGVVPDIITMAKGMGNGQPLGAVITRREIAEALEAEGYFFSSAGGSPVSCQ
IGMAVLDVMEEEHLWENARVVGGHFKARLEALIDRYPLVGAVHGSGFYLGVELIRDRDTL
EPATEETTALCNRLRALGIFMQPTGDYLNILKIKPPMVTTRQSVDFFVDMLVKVLDEGL