PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf6N2E2_4086 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_4086 (483 amino acids)

SeqID: Pf6N2E2_4086 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_4086
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [11 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 2500890: Amino acid carrier protein alsT]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf6N2E2_4086 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_4086
MLEVINDFLSGKVLIVLIVGLGSYFTIRSRFVQFRHFFHMFTVFRDSLKSSTDQLSSFQA
LMLSLAGRVGAGNIAGVGIAVTLGGPGAVFWMWVTALVGMSSSFFECSLGQLYKRCDSEG
QFRGGPSYYIQHGLQKRWLGMIMAFLLLVTFGFAFNGLQAHAVTHSLNNAFGFDTTYTGL
GLAVLLGLVFIGGIKRIAKVADLLVPVKTLAYIAVTIYVIVLQFDHVPAMLATIVKSAFG
LDQAFGGLIGSAIVMGVKRGVFANEAGLGSAPNVAAVASVEHPVAQGVVQAFSVFLDTFV
ICTCTALLILLSGFYTPGFEGDGIALTQNSLAAVVGDWGRMFISVALALFVFTSILYNYY
LGENNLRFMLGENRKALIAYRALVLVLIFWGAIENLSTVFAFADITMTLLAFVNLIALFL
LFKVGMRILRDYDDQRSAGIKTPVFDSSKFPDLDLDRKAWPASPSAPVAKPDAAVAGATA
AQR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory