PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf6N2E2_4485 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_4485 (360 amino acids)

SeqID: Pf6N2E2_4485 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_4485
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 2498933: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf6N2E2_4485 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_4485
MGQRTPLYDLHLALGAKMVDFGGWDMPLHYGSQVEEHHQVRRDCGVFDVSHMTVIDVDGP
QAKVWLQRLLANDVDRLQDTGSALYSAMLNERGGIVDDMIIYRVEDGYRLVFNASTRDQD
LAWMQAQLGGYDVQLHERPELAMLAIQGPQARQKIAELVTQPRGQIIQQLKPFEGRADGE
WFIARTGYTGEDGLEIVLPAQEAPSFFNDLVGAGISPIGLGARDTLRLEAGMNLYGQDIN
QDVSPLASNMAWSIAWEPASRPFIGRSALEAELASGVQHKLVGLVLEERGVLRAHQVVRI
ANVGEGEITSGSFSPTLSKSIALARVPMATADRAEVEIRGKWYPVRVVKPTFVRHGKTLI