PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf6N2E2_4958 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_4958 (417 amino acids)

SeqID: Pf6N2E2_4958 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_4958
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [2 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 2500947: Cystathionine gamma-synthase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf6N2E2_4958 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_4958
MNNKPDSTGLDNAGAGTRAVWGGEQVRHPYNATQTPIVASAAYGYDDIDVWYDVALGKAP
GFIYSRMSNPTVETLEAKIRELEMAESAVAFSSGMAAISSVLYTFLAHGDRVVSTKDSYG
GTNKIFEEFLPRTGVAVTLCETFDHDDLEREIAKGCQVLYLETPTNPTLKILDIPRLVAA
AKRVGAVVVADNTFATPLNQSPLALGVDVVIHSATKFLSGHGDVLGGLVCGSEALMAQVR
HYREINGASLDPFSAYLIIRGMKTLALRMRQQQHSARALAEFLCTEPLVEAVNYPGLPSH
PNHAVACAQMSGFGAIVSFVLVGGMDTVKLLLPRLRFAHCAGNLGAVETIYGPARTTSHV
ENTLEERLALGISEGLVRVSVGIEDTDDLLDDLKQAFAFVKKTLTPQLNEAPIETAS