PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf6N2E2_4966 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_4966 (424 amino acids)

SeqID: Pf6N2E2_4966 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_4966
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Extracellular                 [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Extracellular                 [matched 3914947: Extracellular protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Extracellular          10.00
    Periplasmic            0.00
    OuterMembrane          0.00
    CytoplasmicMembrane    0.00
    Cytoplasmic            0.00
  Final Prediction:
    Extracellular          10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf6N2E2_4966 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_4966
MKTTTEKFGVTPHQPSLWTRADALKVRADDPTTTQPLVSADFPVLNNDVFIWDTMPLRDL
DGNVTSVDGWSVIFTLTADRHPNDPAYLDEDGNYDILRDWNDRHGRAKMYYWFSRTGKNW
EFGGRVMAEGVSPTAREWAGTPILLNDRGEVDLYYTAVTPGATIVKVRGRVVTTEHGVSM
VGFEKVKPLFEADGKMYQTEAQNAFWGFRDPWPFRDPKDGKLYMLFEGNVAGERGSHKVG
EAEIGDVPPGYEDVGNSRFQTACVGIAVARDADGDDWEMLPPLLTAVGVNDQTERPHFVF
QDGKYYLFTISHTFTYADGVTGPDGVYGFVADSLFGPYVPLNGSGLVLGNPSSQPFQTYS
HYVMPNGLVTSFIDSVPTDETGTQIRVGGTEAPTVGMKIKGQQTFVVAEYDYGYIPPMLD
VTLK