PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf6N2E2_5078 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_5078 (688 amino acids)

SeqID: Pf6N2E2_5078 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_5078
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [17 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 732104: Inner membrane protein yjiY]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf6N2E2_5078 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_5078
MKNNNSLLRHLPWLLLAVVGACALGVVALRRGEAINALWIVVAAVAIYLVAYRYYSLFIA
NNVMQLDARRATPAVLNNDGLDYVPTNKHILFGHHFAAIAGAGPLVGPVLAAQMGYLPGT
LWLIAGVVLAGAVQDFMVLFLSTRRNGRSLGDMVREEMGRIPGTIALFGCFLIMIIILAV
LALIVVKALAESPWGIFTVMATIPIAMFMGIYMRYIRPGRIGEISVIGVLLLLGSIWLGG
QIAADPVWAKAFTFTGIQITWMLIGYGFVAAVLPVWLILAPRDYLSTFLKIGTIVALAIG
ILVTMPELKMPALTQFTDGTGPVWKGGLFPFLFITIACGAVSGFHALISSGTTPKLLDNE
TNARYIGYGGMLMESFVAIMAMVAASVIEPGVYFAMNSPAAIVGGDVVAVAQTVSSWGFA
ITPEALQAVAKDIGETTVLARAGGAPTLAVGIAQILHSVLPGENTMAFWYHFAILFEALF
ILTAVDAGTRAGRFMLQDLLGSFVPALKRTESWTANLIATAGCVALWGYLLYQGVIDPLG
GINTLWPLFGISNQMLAGIALMLATVVLIKMKRQRYVWVTLLPASWLLICTTTAGLIKLF
DANPAIGFLALARKYNDALAAGQVLAPAKSIEQMQHVVFNAYTNATLTVLFLFVVFSILF
YALKVGIAAWGTKERTDKEAPFQAVPDA