PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf6N2E2_5472 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_5472 (770 amino acids)

SeqID: Pf6N2E2_5472 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_5472
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf6N2E2_5472 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_5472
MALAHTLGFPRIGADRELKKALEAYWKGDLAPAALQAVGRELRARHWQLQKDAGIDLLPV
GDFAWYDQVLSHSLTLGVVPPRFHSTLNAQGRPTLDTLFAMARGATASCCGADHGQAQYA
QELTKWFDTNYHYLVPEFSADQTFALSWEQLFDEVDEAHALGHQVKPVIIGPLTYLWLGK
AKGEAFDKLGLLERLLPVYGEILNRLKAQGVEWVQIDEPILTLDLPQAWKSAFERAYHIL
QYSPLKKLVATYFSGLQDNLGLAVSLPVDGLHIDAVRAPEQLGQVLDRLPTYKILSVGLV
NGRNVWRCELEQALAQLQPAQERFGDNLWVSTSCSLLHSPVDLEREDRLDPELKSWLAFA
VQKCGEVAVLRDALNDPHAPAVQQALADSREVQASRARSARIHKPAVQARLAAIGPQDSQ
RRSPFAKRIERQRARLKLPAFPTTTIGSFPQTPAIRLARQAYKQGKLSANDYQDAMHTEI
RHAVQIQERLGLDVLVHGEAERNDMVEYFAEHLDGYVFTRFGWVQSYGSRCVKPAIIYGD
ISRPSAMTVDWIRYAQSLTDKVMKGMLTGPVTMLMWSFPREDVSRQVQARQLALALRDEV
LDLEKAGIKIVQIDEAAFREGLPLRRGQWQEYLDWAVDAFRLCASGVADETQIHTHMCYS
EFNDVIKAIADMDADVITIETSRSDMELLEAFEAFDYPNDIGPGVYDIHSPRVPDTAEMV
ALMSKAVKRIAAERLWINPDCGLKTRGWPETEAALVNMVAAARQLRSQLA