PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf6N2E2_5475 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_5475 (545 amino acids)

SeqID: Pf6N2E2_5475 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_5475
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599890: acetolactate synthase large subunit[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf6N2E2_5475 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_5475
MATCGEVLVKLLHAYGVEQVFGIPGVHTVELYRGLARSNIRHVTPRHEQGAGFMADGYAR
VSGKPGVCFIITGPGMTNITTAMGQAYADSIPMLVISSVQSRNQLGGGRGKLHELPNQAA
LVGGVAAFSHTLMSAAELPGVLARAFAVFQAGRPRPVHIEIPLDVLVEDADALLASVPVN
INRAGAAPSAVAQMAAKLASAQRPLILAGGGAIDAAAELTELAERLGAPVALTINAKGLL
PSRHPLLIGSTQSLVATRALVAEADVVLAIGTELAETDYDITFAGGFEIPGALLRIDIDP
DQTVRNYPPYLALVADARVATRAVLDALSQHPLAERRDDWGTTRAARLRAELQGSWDAAT
RAQTLFLDTVLQALPEAVFVGDSTQPVYTGNLTFNPEQPRRWFNSSTGYGTLGYALPAAI
GAWLGGKDRGHGRPAVVCLIGDGGLQFTLPELASAVEARTPVIVLLWNNQGYEEIKKYMV
NRAIEPVGVDIYTPDFIGVARALGCAAQAIDGVAQLHAALLAACDRQGPTLIEIDQATWM
AQVSK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory