PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf6N2E2_5674 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_5674 (334 amino acids)

SeqID: Pf6N2E2_5674 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_5674
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596099: hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf6N2E2_5674 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_5674
MSVIDLRSDTVTQPSAGMLDAMASAPTGDDVYGEDPTVNRLEAELAARLGFAAALFVPTG
TMSNLLGLMAHCERGDEYIVGQQAHTYKYEGGGAAVLGSIQPQPLEVQADGSLDLAQVAA
AIKPDDFHFARTRLLALENTMQGKVLPLEYLARARRFTQEHGLALHLDGARLYNAAVKLN
VDARQITQHFDSVSVCLSKGLGAPVGSVLCGSVELIGKARRLRKMVGGGMRQAGILAAAG
LYALEHQVQRLADDHGNAQRLAEGLRAAGYEVEPVQTNMVYVQMGERAEAIKAFADERGV
KLSAAPRLRMVTHMDVSAAQIDQVVATFVEFSRH