PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf6N2E2_5741 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_5741 (330 amino acids)

SeqID: Pf6N2E2_5741 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_5741
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596473: cobalamin biosynthetic protein CobC[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf6N2E2_5741 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_5741
MLEHGGRLRNAARQYGIAEADWLDLSSGLAPWPFEVPAIPLRAWARLPETDDGLEQAACD
YYGALDVLPVAGSQMAIQLLPRLRRAGKVGVLSPCYAEHAEAWRRSGYIVREVLESEVDF
FLDSLDVLVVVNPNNPTGLSLAPERLLDWHGRLAQRGGWLVVDEAFMDVTPALSLAAHTH
LVGLIVLRSFGKFFGLAGVRLGFVLAERRLLKLLAEQVGPWVVSGPTRVLGQACLLDTDA
HAYQRQRCEANSQRLALMLERHGFKPQGGCGLFQWLVTEHALGLHDFMAHRGILLRLFTN
TSSLRFGLPADDSEFLRLEQALEAYTKDIR