PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf6N2E2_609 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_609 (578 amino acids)

SeqID: Pf6N2E2_609 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_609
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595550: dihydroxy-acid dehydratase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf6N2E2_609 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_609
MSDKKPSLRSAQWFGTADKNGFMYRSWMKNQGIADHQFHGKPIIGICNTWSELTPCNAHF
RQIAEHVKRGVIEAGGFPVEFPVFSNGESNLRPTAMLTRNLASMDVEEAIRGNPIDGVVL
LTGCDKTTPALLMGAASCDVPAIVVTGGPMLNGKHKGQDIGSGTVVWQLSEQVKAGTITI
DDFLAAEGGMSRSAGTCNTMGTASTMACMAEALGTSLPHNAAIPAVDARRYVLAHMSGMR
AVEMVREDLKLSKILTKEAFENAIRVNAAIGGSTNAVIHLKAIAGRIGVQLDLDDWTRIG
RGMPTIVDLQPSGRFLMEEFYYAGGLPAVLRRLGEANLIPHPNALTVSGKSIGENTKDAP
IYGQDEVIRTLDNPIRADGGICVLRGNLAPLGAVLKPSAATAELMQHRGRAVVFENFDEY
KARINDPELDVDASSILVMKNCGPKGYPGMAEVGNMGLPAKLLAQGVTDMVRISDARMSG
TAYGTVVLHVAPEAAAGGPLAAVKEGDWIELDCTSGRLHLDIPDAELAARLADIVPPQQL
LVGGYRQLYIDHVLQADQGCDFDFLVGCRGAEVPRHSH

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory