PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf6N2E2_704 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_704 (102 amino acids)

SeqID: Pf6N2E2_704 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_704
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 2507571: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            10.00
    Extracellular          0.00
    OuterMembrane          0.00
    CytoplasmicMembrane    0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf6N2E2_704 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_704
MKPILIALALTAAYSLPALAQDGPTLFKSKPCAACHSIDTKVVGPALKDVAAKNAGVAGA
QDLLAKHIKEGTQGNWGPMPMPANPVTEEEAKILAAWVLTLK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory