PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Pf6N2E2_810 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_810 (436 amino acids)

SeqID: Pf6N2E2_810 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_810
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.50
    OuterMembrane          2.50
    Periplasmic            2.50
    Extracellular          2.50
    Cytoplasmic            0.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Pf6N2E2_810 FitnessBrowser__pseudo6_N2E2:Pf6N2E2_810
MKPSVKALLVSTCMTLSSVSFGAQTLTIATVNNSDMIRMQKLSKTFEAEHPDIKLNWVVL
EENVLRQRLTTDIATQGGQFDVLTIGMYEAALWGAKGWLEPMKDLPASYDLDDVFPSVRD
GLSVKGSLYALPFYAESSITYYRTDLFKNAGLTMPEHPTWSQIGEFAEKLTDKAKEQYGL
CLRGKAGWGENMALITTLANGYGARWFDEKWQPQFNGPEWKEALNFYVDNMKKSGPPGAS
SNGFNENLALFNSGKCAIWVDASVAGSFVTDKTQSKVADHVGFTFAPHEKTDKGTSWMYS
WSLAIPTSSKAKDAATVFTTWATSKEYSQLVAKTDGIANVPPGTRTSTYSDEYMKAAPFA
KVTLESLKVADPKAPTLKPVPYIGIQLVTIPEFQAIGTQVGKFFSGALTGQQTVDQALTA
AQSTTEREMKRAGYPK