PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PfGW456L13_1712 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_1712 (445 amino acids)

SeqID: PfGW456L13_1712 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_1712
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          CytoplasmicMembrane           [matched PS50850: MFS Profile - Cytoplasmic Membrane ]
    SCL-BLAST-        CytoplasmicMembrane           [matched 586685: Inner membrane metabolite transport protein yhjE]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PfGW456L13_1712 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_1712
MTVRDNRMTTSTTYSDSTPAQPTNSATRVATASFIGTAIEFYDFYVYATAAALVIGPVFF
PQTSGTAQMLSAFLTFGIAFLARPLGSALFGHFGDRIGRKSTLVASLLLMGVCTTLIGVL
PGYDSIGAWAPILLCVLRFGQGLGLGGEWGGAALLATENAPKGKRAWFGMFPQLGPSIGF
LAANGLFLTLAVVLDDEQFRSWGWRIPFLLSAALVMVGLYVRLKLHETPVFANAMARQER
VKIPLFELFGQYWVPVLLGAGAMVVCYALFYISTVFSLSYGVATLGYSRETFLGLLCFAV
LFMAAATPLSAWASDRYGRKPVLIIGGVLAILSGFLMEPLLTQGSTWGVALFLCIELFLM
GVTFAPMGALLPELFPTHVRYTGASAAYNLGGIVGASAAPFFAQKLVAMGGLSYVGGYVS
AAAVLSLIAVLCLKETRHNDLNQVA